Scaffold A3PFW1_10023851

Overview

Basic Information

• Taxon OID: 3300001535
• Scaffold ID: A3PFW1_10023851
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2965
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040820	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
A3PFW1_100238512	F040820	GAG	VLLSLKDGTSRGSASVGKDVVAVIVSDDGKTAYLADSAPGDVYAVRLPGLQVAWKQHVGGAPFGLLLHDGRLFVSLFDGAAVVELDLSNGRELATHPVPQGPAVMTTDGGGHVVVAGTRGQLNVIGGGQLAAGNGFGLAFAGGTLWSADYERAELVPAGDDHRVGLPLPVFPFWLAPGAGSTLLIAAEGGTEDTDPGGVFSFDTMTGTFTTLATPKDPDQVLQSGSAIFVAAHGDQEVLAIQDGRVSMWARGAGVVAIAPDPSLDLLVVAVNAHE*